1. The Gene Ontology Resource: 20 years and still GOing strong. Nucleic Acids Res 2019; 47: 330-338. [
DOI:10.1093/nar/gky1055]
2. Agic A, Djalali S, Diedrich K, Hornung D. Apoptosis in endometriosis. Gynecol Obstet Invest 2009; 68: 217-223. [
DOI:10.1159/000235871]
3. Borghese B, Mondon F, Noël J C, Fayt I, Mignot T M, Vaiman D, et al. Gene expression profile for ectopic versus eutopic endometrium provides new insights into endometriosis oncogenic potential. Mol Endocrinol 2008; 22: 2557-2562. [
DOI:10.1210/me.2008-0322]
4. Borghese B, Zondervan K T, Abrao M S, Chapron C, Vaiman D. Recent insights on the genetics and epigenetics of endometriosis. Clin Genet 2017; 91: 254-264. [
DOI:10.1111/cge.12897]
5. Brosens J J, Hodgetts A, Feroze-Zaidi F, Sherwin J R, Fusi L, Salker M S, et al. Proteomic analysis of endometrium from fertile and infertile patients suggests a role for apolipoprotein A-I in embryo implantation failure and endometriosis. Mol Hum Reprod 2010; 16: 273-285. [
DOI:10.1093/molehr/gap108]
6. Chen M, Zhou Y, Xu H, Hill C, Ewing R M, He D, et al. Bioinformatic analysis reveals the importance of epithelial-mesenchymal transition in the development of endometriosis. Sci Rep 2020; 10: 8442. [
DOI:10.1038/s41598-020-65606-9]
7. Chin C H, Chen S H, Wu H H, Ho C W, Ko M T, Lin C Y. cytoHubba: identifying hub objects and sub-networks from complex interactome. BMC Syst Biol 2014; 8 Suppl 4: S11. [
DOI:10.1186/1752-0509-8-S4-S11]
8. Du Z, Fei T, Verhaak R G, Su Z, Zhang Y, Brown M, et al. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. Nat Struct Mol Biol 2013; 20: 908-913. [
DOI:10.1038/nsmb.2591]
9. Dwiningsih S R, Meilani C, Hadi S. Brain derived neurotrophic factor as a non-invasive biomarker for detection of endometriosis. J Reprod Infertil 2022; 23: 207-212. [
DOI:10.18502/jri.v23i3.10012]
10. Ferrero S, Gillott D J, Remorgida V, Anserini P, Leung K Y, Ragni N, et al. Proteomic analysis of peritoneal fluid in women with endometriosis. J Proteome Res 2007; 6: 3402-3411. [
DOI:10.1021/pr060680q]
11. Fouquet B, Santulli P, Noel J C, Misrahi M. Ovarian-like differentiation in eutopic and ectopic endometrioses with aberrant FSH receptor, INSL3 and GATA4/6 expression. BBA Clin 2016; 6: 143-152. [
DOI:10.1016/j.bbacli.2016.11.002]
12. Geisler S, Coller J. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts. Nat Rev Mol Cell Biol 2013; 14: 699-712. [
DOI:10.1038/nrm3679]
13. Giacomini E, Minetto S, Li Piani L, Pagliardini L, Somigliana E, Viganò P. Genetics and Inflammation in endometriosis: Improving knowledge for development of new pharmacological strategies. Int J Mol Sci 2021; 22. [
DOI:10.3390/ijms22169033]
14. Giudice L C. Clinical practice. Endometriosis. N Engl J Med 2010; 362: 2389-2398. [
DOI:10.1056/NEJMcp1000274]
15. Halme J, Hammond M G, Hulka J F, Raj S G, Talbert L M. Retrograde menstruation in healthy women and in patients with endometriosis. Obstet Gynecol 1984; 64: 151-154.
16. Jiang Q, Xue D, Shi F, Qiu J. Prognostic significance of an autophagy-related long non-coding RNA signature in patients with oral and oropharyngeal squamous cell carcinoma. Oncol Lett 2021; 21: 29. [
DOI:10.3892/ol.2020.12290]
17. Kanehisa M, Sato Y, Kawashima M, Furumichi M, Tanabe M. KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res 2016; 44: 457-462. [
DOI:10.1093/nar/gkv1070]
18. Kim H I, Kim T H, Yoo J Y, Young S L, Lessey B A, Ku B J, et al. ARID1A and PGR proteins interact in the endometrium and reveal a positive correlation in endometriosis. Biochem Biophys Res Commun 2021; 550: 151-157. [
DOI:10.1016/j.bbrc.2021.02.144]
19. Li L, Guo X, Liu J, Chen B, Gao Z, Wang Q. The role of miR-27b-3p/HOXA10 axis in the pathogenesis of endometriosis. Ann Palliat Med 2021; 10: 3162-3170. [
DOI:10.21037/apm-21-343]
20. Liang M L, Hsieh T H, Ng K H, Tsai Y N, Tsai C F, Chao M E, et al. Downregulation of miR-137 and miR-6500-3p promotes cell proliferation in pediatric high-grade gliomas. Oncotarget 2016; 7: 19723-19737. [
DOI:10.18632/oncotarget.7736]
21. Lin A, Yin J, Cheng C, Yang Z, Yang H. Decreased expression of FOXA2 promotes eutopic endometrial cell proliferation and migration in patients with endometriosis. Reprod Biomed Online 2018; 36: 181-187. [
DOI:10.1016/j.rbmo.2017.11.001]
22. Liu D, Yang N, Liang Y, Chen M, Yang F, Liu L, et al. Increased expression of epithelial cell adhesion molecule and its possible role in epithelial-mesenchymal transition in endometriosis. J Obstet Gynaecol Res 2020; 46: 2066-2075. [
DOI:10.1111/jog.14401]
23. Liu S, Xin W, Lu Q, Tang X, Wang F, Shao W, et al. Knockdown of lncRNA H19 suppresses endometriosis in vivo. Braz J Med Biol Res 2021; 54: e10117. [
DOI:10.1590/1414-431x202010117]
24. Liu Z, Liu L, Zhong Y, Cai M, Gao J, Tan C, et al. LncRNA H19 over-expression inhibited Th17 cell differentiation to relieve endometriosis through miR-342-3p/IER3 pathway. Cell Biosci 2019; 9: 84. [
DOI:10.1186/s13578-019-0346-3]
25. Love M I, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 2014; 15: 550. [
DOI:10.1186/s13059-014-0550-8]
26. Marla S, Mortlock S, Houshdaran S, Fung J, McKinnon B, Holdsworth-Carson S J, et al. Genetic risk factors for endometriosis near estrogen receptor 1 and coexpression of genes in this region in endometrium. Mol Hum Reprod 2021; 27. [
DOI:10.1093/molehr/gaaa082]
27. Matias-Guiu X, Stewart C J R. Endometriosis-associated ovarian neoplasia. Pathology 2018; 50: 190-204. [
DOI:10.1016/j.pathol.2017.10.006]
28. Matsuzaki S, Darcha C. In vitro effects of a small-molecule antagonist of the Tcf/ß-catenin complex on endometrial and endometriotic cells of patients with endometriosis. PLoS One 2013; 8: e61690. [
DOI:10.1371/journal.pone.0061690]
29. Montgomery G W, Nyholt D R, Zhao Z Z, Treloar S A, Painter J N, Missmer S A, et al. The search for genes contributing to endometriosis risk. Hum Reprod Update 2008; 14: 447-457. [
DOI:10.1093/humupd/dmn016]
30. Panir K, Schjenken J E, Robertson S A, Hull M L. Non-coding RNAs in endometriosis: a narrative review. Hum Reprod Update 2018; 24: 497-515. [
DOI:10.1093/humupd/dmy014]
31. Paraskevopoulou M D, Hatzigeorgiou A G. Analyzing MiRNA-LncRNA Interactions. Methods Mol Biol 2016; 1402: 271-286. [
DOI:10.1007/978-1-4939-3378-5_21]
32. Paraskevopoulou M D, Vlachos I S, Karagkouni D, Georgakilas G, Kanellos I, Vergoulis T, et al. DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res 2016; 44: 231-238. [
DOI:10.1093/nar/gkv1270]
33. Qian B, Liu Q, Wang C, Lu S, Ke S, Yin B, et al. Identification of MIR600HG/hsa-miR-342-3p/ANLN network as a potential prognosis biomarker associated with lmmune infiltrates in pancreatic cancer. Sci Rep 2023; 13: 15919. [
DOI:10.1038/s41598-023-43174-y]
34. Ritchie M E, Phipson B, Wu D, Hu Y, Law C W, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 2015; 43: e47. [
DOI:10.1093/nar/gkv007]
35. Riva P, Ratti A, Venturin M. The long Non-Coding RNAs in neurodegenerative diseases: Novel mechanisms of pathogenesis. Curr Alzheimer Res 2016; 13: 1219-1231. [
DOI:10.2174/1567205013666160622112234]
36. Sampson J A. Metastatic or embolic endometriosis, due to the menstrual dissemination of endometrial tissue into the venous circulation. Am J Pathol 1927; 3: 93-110.
37. Sebastian-delaCruz M, Gonzalez-Moro I, Olazagoitia-Garmendia A, Castellanos-Rubio A, Santin I. The role of lncRNAs in gene expression regulation through mRNA stabilization. Noncoding RNA 2021; 7. [
DOI:10.3390/ncrna7010003]
38. Şerifoğlu H, Arinkan S A, Pasin O, Vural F. Is there an association between endometriosis and thyroid autoimmunity? Rev Assoc Med Bras (1992) 2023; 69: e20221679. [
DOI:10.1590/1806-9282.20221679]
39. Shafrir A L, Farland L V, Shah D K, Harris H R, Kvaskoff M, Zondervan K, et al. Risk for and consequences of endometriosis: A critical epidemiologic review. Best Pract Res Clin Obstet Gynaecol 2018; 51: 1-15. [
DOI:10.1016/j.bpobgyn.2018.06.001]
40. Shannon P, Markiel A, Ozier O, Baliga N S, Wang J T, Ramage D, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003; 13: 2498-2504. [
DOI:10.1101/gr.1239303]
41. Sticht C, De La Torre C, Parveen A, Gretz N. miRWalk: An online resource for prediction of microRNA binding sites. PLoS One 2018; 13: e0206239. [
DOI:10.1371/journal.pone.0206239]
42. Subramanian A, Tamayo P, Mootha V K, Mukherjee S, Ebert B L, Gillette M A, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 2005; 102: 15545-15550. [
DOI:10.1073/pnas.0506580102]
43. Szklarczyk D, Kirsch R, Koutrouli M, Nastou K, Mehryary F, Hachilif R, et al. The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic Acids Res 2023; 51: 638-646. [
DOI:10.1093/nar/gkac1000]
44. Tomassetti C, D’Hooghe T. Endometriosis and infertility: Insights into the causal link and management strategies. Best Pract Res Clin Obstet Gynaecol 2018; 51: 25-33. [
DOI:10.1016/j.bpobgyn.2018.06.002]
45. Trabert B, Schwartz S M, Peters U, De Roos A J, Chen C, Scholes D, et al. Genetic variation in the sex hormone metabolic pathway and endometriosis risk: an evaluation of candidate genes. Fertil Steril 2011; 96: 1401-1406. [
DOI:10.1016/j.fertnstert.2011.09.004]
46. Vercellini P, Viganò P, Somigliana E, Fedele L. Endometriosis: pathogenesis and treatment. Nat Rev Endocrinol 2014; 10: 261-275. [
DOI:10.1038/nrendo.2013.255]
47. Wan Y, Huang J, Song Y, Gu C, Kong J, Zuo L, et al. hsa-miR-340-5p inhibits epithelial-mesenchymal transition in endometriosis by targeting MAP3K2 and inactivating MAPK/ERK signaling. Open Med (Wars) 2022; 17: 566-576. [
DOI:10.1515/med-2022-0448]
48. Wang S, Duan H, Li B, Hong W, Li X, Wang Y, et al. BDNF and TrKB expression levels in patients with endometriosis and their associations with dysmenorrhoea. J Ovarian Res 2022; 15: 35. [
DOI:10.1186/s13048-022-00963-9]
49. Xiong X D, Ren X, Cai M Y, Yang J W, Liu X, Yang J M. Long non-coding RNAs: An emerging powerhouse in the battle between life and death of tumor cells. Drug Resist Updat 2016; 26: 28-42. [
DOI:10.1016/j.drup.2016.04.001]
50. Xu Y, Gao F, Zhang J, Cai P, Xu D. Fibroblast growth factor receptor 2 promotes the proliferation, migration, and invasion of ectopic stromal cells via activation of extracellular-signal-regulated kinase signaling pathway in endometriosis. Bioengineered 2022; 13: 8360-8371. [
DOI:10.1080/21655979.2022.2054207]
51. Xu Z, Zhang L, Yu Q, Zhang Y, Yan L, Chen Z J. The estrogen-regulated lncRNA H19/miR-216a-5p axis alters stromal cell invasion and migration via ACTA2 in endometriosis. Mol Hum Reprod 2019; 25: 550-561. [
DOI:10.1093/molehr/gaz040]
52. Yao Y, Li N. MIR600HG suppresses metastasis and enhances oxaliplatin chemosensitivity by targeting ALDH1A3 in colorectal cancer. Biosci Rep 2020; 40. [
DOI:10.1042/BSR20200390]
53. Yu G, Wang L G, Han Y, He Q Y. clusterProfiler: an R package for comparing biological themes among gene clusters. Omics 2012; 16: 284-287. [
DOI:10.1089/omi.2011.0118]
54. Yun B S, Won S, Kim J H, Lee N, Kim M, Kim M K, et al. PAX2, PAX8, and PR are correlated with ovarian seromucinous borderline tumor with endometriosis. J Ovarian Res 2022; 15: 41. [
DOI:10.1186/s13048-022-00975-5]
55. Zhang P, Wang G. Progesterone resistance in endometriosis: Current evidence and putative mechanisms. Int J Mol Sci 2023; 24. [
DOI:10.3390/ijms24086992]
56. Zhang T, De Carolis C, Man G C W, Wang C C. The link between immunity, autoimmunity and endometriosis: a literature update. Autoimmun Rev 2018; 17: 945-955. [
DOI:10.1016/j.autrev.2018.03.017]
57. Zhao L, Gu C, Huang K, Fan W, Li L, Ye M, et al. Association between oestrogen receptor alpha (ESR1) gene polymorphisms and endometriosis: a meta-analysis of 24 case-control studies. Reprod Biomed Online 2016; 33: 335-349. [
DOI:10.1016/j.rbmo.2016.06.003]
58. Zhao L, Gu C, Ye M, Zhang Z, Li L, Fan W, et al. Integration analysis of microRNA and mRNA paired expression profiling identifies deregulated microRNA-transcription factor-gene regulatory networks in ovarian endometriosis. Reprod Biol Endocrinol 2018; 16: 4. [
DOI:10.1186/s12958-017-0319-5]
59. Zhao L, Li Z, Chen W, Zhai W, Pan J, Pang H, et al. H19 promotes endometrial cancer progression by modulating epithelial-mesenchymal transition. Oncol Lett 2017; 13: 363-369. [
DOI:10.3892/ol.2016.5389]